Publications and Technical Reports

The following is a comprehensive list of publications and technical reports I've written. Most of them are available on line, and links are provided. You can also check DBLP for a search on my name.

A selection of my publications, organized by subject, is also available.

Note that, in some cases, the papers have been regenerated from the original LaTeX or Word source files, and so formatting may be slightly different from the published versions.


Publications

Declarative Languages for Advanced Information Technology (6.2MB)
Vol. 3, No. 2, June 1988.
A Formal Model for Databases with Applications to Schema Merging (180KB)
Glasgow 1991, Harper and Norrie (eds.).
A Basis for Interactive Schema Merging (432KB)
Proc. Hawaii International Conference on Systems Sciences, 1992.
Theoretical Aspects of Schema Merging (288KB)
Proc. Extending Database Technology (EDBT),
Vienna, 1992.
Facilitating Transformation in a Human Genome Project Database (168KB)
Proc. Third International Conference on Information and Knowledge Management (CIKM),
Gaithersburg, MD, 1994.
Observational Distinguishability of Databases with Object Identity (248KB)
Gubbio, Italy, 1995.
Exploring Heterogeneous Molecular Biology Databases in the Context of the Object-Protocol Model (204KB)
Theoretical and Computational Methods in Genome Research,
Suhai, S. (Ed), Plenum Press, 1997.
Facilities for Exploring Molecular Biology Databases on the Web: A Comparative Study (124KB)
Proc. of the Pacific Symposium on Biocomputing,
Hawaii, January 1997.
WOL: A Language for Database Transformations and Constraints (140KB)
Proc. 13th International Conference on Data Engineering (ICDE),
Birmingham, United Kingdom, 1997.
Constructing and Maintaining Scientific Database Views (280KB)
Proc. of the 9th International Conference on Scientific and Statistical Database Management,
Olympia, WA, 1997, Hansen and Ioannidis (eds.).
Object-Protocol Model Data Management Tools '97 (380KB)
Bioinformatics Databases and Systems,
Stan Letovsky (ed), Kluwer Academic Publishers, 1999, pp. 187-199.
Semantics of Database Transformations (324KB)
Semantics in Databases, Springer Lecture Notes in Computer Science,
1998, Thalheim and Libkin (eds.).
Exploring Heterogeneous Biological Databases: Tools and Applications (288KB)
Proc. of the 6th International Conference on Extending Database Technology (EDBT'98),
Valencia, Spain, 1998.
Advanced Query Mechanisms for Biological Databases (208KB)
Proc. of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB'98),
June 1998.
Seamless Integration of Biological Applications within a Database Framework(266KB)
Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB'99),
Heidelberg, Germany, June 1999.
Specifying Database Transformations in WOL (164KB)
IEEE Data Engineering Bulletin,
Vol. 22, No. 1, 1999, pp. 25-30.
Extending traditional query-based integration approaches for functional characterization of post-genomic data (11.2MB)
Journal of Bioinformatics, Vol. 17, No. 7, 2001, pp. 587-601.
Gene Expression Data Management: A Case Study (216KB)
Proc. Eighth International Conference on Extending Database Technology,
Prague, 2002, pp. 722-731.
Integration Challenges in Gene Expression Data Management (Draft) (234KB)
(with V.M. Markowitz, J. Campbell, I.A. Chen, K. Planiappan, and T. Topaloglou)
To appear in Bioinformatics: Managing Scientific Data,
Morgan Kauffman/Elsevier Science, 2003, Z. Lacroix and T. Critchlow (eds.).


Technical Reports

Formal Models For Concurrent Communicating Systems (240KB)
(submitted to fulfill requirements for Written Preliminary Exam of University of Pennsylvania PhD. program),
Technical report MS-CIS-91-34, University of Pennsylvania, 1991.
Modeling and Merging Database Schemas (572KB)
Technical Report (MS-CIS-91-65), University of Pennsylvania, 1991.
Types With Extents: On transforming and querying self-referential data-structures (740KB)
Technical Report (MS-CIS-95-21), University of Pennsylvania, 1995.
OPM*QS: The Object-Protocol Model Multidatabase Query System (304KB)
(with I. A. Chen, V. M. Markowitz and E. Szeto)
Lawrence Berkeley National Laboratory technical report LBNL-38181, 1995.
Transforming Databases with Recursive Data Structures (856KB)
Technical Report (MS-CIS-96-18), University of Pennsylvania, 1996.
Effecting Database Transformations Using Morphase (263KB)
Technical Report (MS-CIS-96-05), University of Pennsylvania, 1996.
The OPM Query Translator (336KB)
Lawrence Berkeley National Laboratory technical report LBNL-38180, 1996.
OPM Data Management Tools for CORBA Compliant Environments (192KB)
(with I. A. Chen, V. M. Markowitz and E. Szeto)
Lawrence Berkeley National Laboratory technical report LBNL-38975, 1996.

Anthony Kosky (anthony@genelogic.com)